for file in * do file=${file//.bam/} samtools sort -@ 14 $file.bam > $file.sorted.bam samtools index -@ 14 -b $file.sorted.bam samtools idxstats -@ 14 $file.sorted.bam > $file.idxstats.txt done
for file in * do file=${file//.bam/} samtools sort -@ 14 $file.bam > $file.sorted.bam samtools index -@ 14 -b $file.sorted.bam samtools idxstats -@ 14 $file.sorted.bam > $file.idxstats.txt done