samtools bam2counts

#!/bin/bash
# Bash Menu Script Example

PS3='Please enter your choice: '
options=("Option 1" "Option 2" "Option 3" "Quit")
select opt in "${options[@]}"
do
    case $opt in
        "Option 1")
            echo "you chose choice 1"
            ;;
        "Option 2")
            echo "you chose choice 2"
            ;;
        "Option 3")
            echo "you chose choice $REPLY which is $opt"
            ;;
        "Quit")
            break
            ;;
        *) echo "invalid option $REPLY";;
    esac
done

wsl --shutdown
diskpart
# open window Diskpart
select vdisk file="C:\WSL-Distros\…\ext4.vhdx"
attach vdisk readonly
compact vdisk
detach vdisk
exit

xhost +local:docker

composer install --ignore-platform-reqs

Normal Version: 
echo 'nice12343game' | sed -n 's/nice\(.*\)game/\1/p'

Jenkins Version:
sed -n 's/.*exited with code \\(.*\\)/\\1/p' stdout

# WSL2 network port forwarding script v1
#   for enable script, 'Set-ExecutionPolicy -ExecutionPolicy Bypass -Scope CurrentUser' in Powershell,
#   for delete exist rules and ports use 'delete' as parameter, for show ports use 'list' as parameter.
#   written by Daehyuk Ahn, Aug-1-2020

# Display all portproxy information
If ($Args[0] -eq "list") {
    netsh interface portproxy show v4tov4;
    exit;
} 

# If elevation needed, start new process
If (-NOT ([Security.Principal.WindowsPrincipal] [Security.Principal.WindowsIdentity]::GetCurrent()).IsInRole([Security.Principal.WindowsBuiltInRole]::Administrator))
{
  # Relaunch as an elevated process:
  Start-Process powershell.exe "-File",('"{0}"' -f $MyInvocation.MyCommand.Path),"$Args runas" -Verb RunAs
  exit
}

# You should modify '$Ports' for your applications 
$Ports = (22,80,443,8080)

# Check WSL ip address
wsl hostname -I | Set-Variable -Name "WSL"
$found = $WSL -match '\d{1,3}\.\d{1,3}\.\d{1,3}\.\d{1,3}';
if (-not $found) {
  echo "WSL2 cannot be found. Terminate script.";
  exit;
}

# Remove and Create NetFireWallRule
Remove-NetFireWallRule -DisplayName 'WSL 2 Firewall Unlock';
if ($Args[0] -ne "delete") {
  New-NetFireWallRule -DisplayName 'WSL 2 Firewall Unlock' -Direction Outbound -LocalPort $Ports -Action Allow -Protocol TCP;
  New-NetFireWallRule -DisplayName 'WSL 2 Firewall Unlock' -Direction Inbound -LocalPort $Ports -Action Allow -Protocol TCP;
}

# Add each port into portproxy
$Addr = "0.0.0.0"
Foreach ($Port in $Ports) {
    iex "netsh interface portproxy delete v4tov4 listenaddress=$Addr listenport=$Port | Out-Null";
    if ($Args[0] -ne "delete") {
        iex "netsh interface portproxy add v4tov4 listenaddress=$Addr listenport=$Port connectaddress=$WSL connectport=$Port | Out-Null";
    }
}

# Display all portproxy information
netsh interface portproxy show v4tov4;

# Give user to chance to see above list when relaunched start
If ($Args[0] -eq "runas" -Or $Args[1] -eq "runas") {
  Write-Host -NoNewLine 'Press any key to close! ';
  $null = $Host.UI.RawUI.ReadKey('NoEcho,IncludeKeyDown');
}

#!/usr/bin/env bash

# install github-cli
VERSION=`curl  "https://api.github.com/repos/cli/cli/releases/latest" | grep '"tag_name"' | sed -E 's/.*"([^"]+)".*/\1/' | cut -c2-`
echo $VERSION
mkdir ~/downloads
curl -sSL https://github.com/cli/cli/releases/download/v${VERSION}/gh_${VERSION}_linux_amd64.tar.gz -o ~/downloads/gh_${VERSION}_linux_amd64.tar.gz
cd ~/downloads
tar xvf gh_${VERSION}_linux_amd64.tar.gz
sudo cp gh_${VERSION}_linux_amd64/bin/gh /usr/local/bin/
gh version
sudo cp -r ~/downloads/gh_${VERSION}_linux_amd64/share/man/man1/* /usr/share/man/man1/
# man gh
gh auth login

rm -r ~/downloads

npx create-html5-boilerplate new-site

...

<ion-content class="scanner-hide" *ngIf="scanStatus == false">
  <div class="padding-container center">
    <ion-button color="primary" (click)="scanCode()"><ion-icon slot="start" name="qr-code-outline"></ion-icon> Scanear Código</ion-button> <!-- Botão que chama a função do scanner-->
  </div>
  <ion-card>
    <ion-card-content><h1>{{ result }}</h1></ion-card-content> <!-- mostra o resultado do scan -->
  </ion-card>
  
  <div class="scanner-ui"> <!-- Quando estamos a scanear, chama esta classe-->
    ...Scanner Interface
    </div>
    <div class="ad-spot"></div>
</ion-content>

for file in *
do
file=${file//.bam/}
samtools sort -@ 14 $file.bam > $file.sorted.bam
samtools index -@ 14 -b $file.sorted.bam
samtools idxstats -@ 14 $file.sorted.bam > $file.idxstats.txt
done

 https://cronhub.io/ping/1f5e3410-254c-11e8-b61d-55875966d031

# WARNING: This will LOCK ALL PUBLIC REPOSITORIES ON YOUR GITHUB ACCOUNT
#
# dependencies hub and jq
# - hub: hub.github.com
# - jq: https://stedolan.github.io/jq/
#
# A better alternative would be to pipe the repos into a temporary file:
# $ hub api --paginate users/amingilani/repos | jq -r '.[]."full_name"' > repos.txt
# Then manually remove your active repositories
# And archive the remaining:
# $ cat repos.txt | xargs -I {} -n 1 hub api -X PATCH -F archived=true /repos/{}
#
# Anyways, to archive all public repositories in your GitHub account:
#
hub api --paginate users/amingilani/repos | jq -r '.[]."full_name"' | xargs -I {} -n 1 hub api -X PATCH -F archived=true /repos/{}

git rev-parse --show-toplevel

could be enough if executed within a git repo.
From git rev-parse man page:

--show-toplevel

mkdir /mnt/f
mount -t drvfs f: /mnt/f