filter and stats using seqkit
Fri May 21 2021 21:00:33 GMT+0000 (Coordinated Universal Time)
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@rezaeir
$ cat hairpin.fa | seqkit seq | seqkit stats
file format type num_seqs sum_len min_len avg_len max_len
- FASTA RNA 28,645 2,949,871 39 103 2,354
$ cat hairpin.fa | seqkit seq -m 100 | seqkit stats
file format type num_seqs sum_len min_len avg_len max_len
- FASTA RNA 10,975 1,565,486 100 142.6 2,354
$ cat hairpin.fa | seqkit seq -m 100 -M 1000 | seqkit stats
file format type num_seqs sum_len min_len avg_len max_len
- FASTA RNA 10,972 1,560,270 100 142.2 938
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https://bioinf.shenwei.me/seqkit/usage/
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