guppy setup

PHOTO EMBED

Tue Dec 21 2021 21:17:30 GMT+0000 (Coordinated Universal Time)

Saved by @rezaeir 

# FAST
~/ont-guppy/bin/guppy_basecaller -c dna_r9.4.1_450bps_hac.cfg -i fast5/ -s fastq -x 'auto' --recursive

# High Accuracy
~/ont-guppy/bin/guppy_basecaller -c dna_r9.4.1_450bps_hac.cfg -i fast5/ -s fastq -x 'auto' --recursive --chunks_per_runner 412

# Super High Accuracy
~/ont-guppy/bin/guppy_basecaller -c dna_r9.4.1_450bps_sup.cfg -i fast5/ -s fastq -x 'auto' --recursive
content_copyCOPY

https://hackmd.io/@Miles/rkYKDHPsO