Firebase Cloud Functions ENV_VARS

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Wed Nov 18 2020 00:08:27 GMT+0000 (UTC)

Saved by @narro #bash

firebase functions:config:set stripe.secret="STRIPE_SECRET_KEY_HERE"

Firebase Cloud Function Env Vars Stripe used as example

https://youtu.be/1__Leh5MBEM

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Firebase Cloud Functions ENV_VARS Get Firestore Data (Documents)

# List all networks a container belongs to

# List all networks a container belongs to
docker inspect -f '{{range $key, $value := .NetworkSettings.Networks}}{{$key}} {{end}}' [container]

# List all containers belonging to a network by name

# List all containers belonging to a network by name
docker network inspect -f '{{range .Containers}}{{.Name}} {{end}}' [network]

#ubuntu #bash #linux

update nodejs on ubuntu

curl -fsSL https://deb.nodesource.com/setup_current.x | sudo -E bash -
sudo apt-get install -y nodejs

use Drupal\Core\DrupalKernel;
use Symfony\Component\HttpFoundation\Request;

if (PHP_SAPI !== 'cli') {
  return;
}

if (version_compare(PHP_VERSION, '5.4.5') < 0) {
  $version = PHP_VERSION;
  echo <<<EOF

ERROR: This script requires at least PHP version 5.4.5. You invoked it with
       PHP version {$version}.
\n
EOF;
  exit;

Esc # exit insert mode
:wq | :x # write and quit

read 1st row of gzipped file

gunzip -c /Users/sethshapiro/Downloads/20210305-KochavaTransactions000000000000.gz | awk 'NR==1 {print; exit}'

Setup Laravel project with one command

#!/bin/bash

if [ ! -f composer.json ]; then
    echo "Please make sure to run this script from the root directory of this repo."
    exit 1
fi

composer install
cp .env.example .env
php artisan key:generate
source "$(dirname "$0")/checkout_latest_docs.sh"
npm install
npm run dev

gzip -v -t file.gz

#bash #assembly #canu

/home/rezaeir/canu-2.1.1/bin/canu -p lambda -d lambda-assembly genomeSize=50000 -nanopore-raw lambda_subsample.fastq.gz

#bash #wgs #subsample #rasusa

subsample fastq file

rasusa --input control_lambda_7_2_2021.fastq.gz --coverage 30 --genomes-size 50000 --output lambda_subsample.fastq.gz

#bash #fastq #join

join fastq.gz files

cat *.fastq.gz > control_lambda_7_2_2021.fastq.gz

#bash #guppy #nanopore #basecall

guppy basecaller

./guppy_basecaller --compress_fastq -i <input dir> -s <output dir> --flowcell FLO-MIN106 --kit SQK-LSK109 -x "cuda:0" --gpu_runners_per_device 4 --num_callers 4 --chunks_per_runner 2048 --barcode_kits "EXP-NBD104" --trim_barcodes

#bash #samtools #bam #count

samtools bam2counts

for file in *
do
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samtools sort -@ 14 $file.bam > $file.sorted.bam
samtools index -@ 14 -b $file.sorted.bam
samtools idxstats -@ 14 $file.sorted.bam > $file.idxstats.txt
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Change file names

#!/usr/bin/env python3
import sys
import subprocess

with open(sys.argv[1]) as f:
        for line in f:
                old_name = line.strip()
                new_name = old_name.replace("jane","jdoe")
                subprocess.run(["mv",old_name,new_name])
        f.close()

Find files by name

#!/bin/bash

>oldFiles.txt
files=$(grep " jane " ../data/list.txt | cut -d ' ' -f 3)
for file in $files; do
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        fi
done

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