guppy basecaller

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Sun Mar 28 2021 12:51:14 GMT+0000 (UTC)

Saved by @rezaeir #bash #guppy #nanopore #basecall

./guppy_basecaller --compress_fastq -i <input dir> -s <output dir> --flowcell FLO-MIN106 --kit SQK-LSK109 -x "cuda:0" --gpu_runners_per_device 4 --num_callers 4 --chunks_per_runner 2048 --barcode_kits "EXP-NBD104" --trim_barcodes
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how to base call nanopore data using gpu with guppy

https://www.notion.so/rezaeir/Code-Snippets-f347e2e7bc2d4217854f17cb0a5e0746